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This menu item is available only when there are selected nodes in the network.Ĭreate edge set from selected nodes. Right-click in the Cytoscape network window, nodes or edges.Ĭreate node set from selected nodes. SetsApp provides two similar sets of menus, one under the Allows the user to specify whether a node or edge set is created. Import Set From File Import a set from file. The file imported/exported should contain a list of names for the nodes/edges, which will be matched against identifiers in a column chosen by the user. This sub-panel contains buttons for reading and writing sets to file. Difference Perform difference of two sets. Intersection Perform intersection of two sets. On most operating systems, it could be done by using Ctrl-Z-Left-mouse-click.Ī new set is created after the operation is performed. The three buttons Union, Intersection, and Difference are activated when two different sets are selected. The Set Operations sub-panel provides methods to manipulate two different sets in the Set Tree sub-panel. Move this node/edge to another set Remove from set Remove this node/edge from this set. Unselect Unselect node/edge in the current network. Select Select node/edge in the current network. Will only copy the nodes/edges shared between the two networks. Copy set to different network Copy this set to a different network. Remove Set Remove set from the current network. Unselect Unselect nodes/edges in the current network. Select Select nodes/edges in the current network. Right-click brings up a context menu that allows manipulation of the set or its elements. The symbol of two pink circles linked by a curved black line indicates that a set or element is an edge set. The symbol of the pink circle indicates that a set or element is a node set. It displays all the sets that have been created using a JTree with a hidden root.Įach set is represented by an internal node, and the child nodes represent elements in the set. Sets Tree is the panel right below the "New Sets" sub-panel. Works the same as "Create node set from attributes" Works the same as "Create node set from attributes" Create set from: edge attributes Create edge sets using attributes. Works the same as "Create edge set" Create set from: node attributes Create node sets using attributes. Works the same as "Create node set" Create set from: selected edges Create sets from selected edges. It contains a drop-down menu with the following items:Ĭreate set from: selected nodes Create sets from selected nodes. This sub-panel allows the user to create new sets. It resides on the left side of the Cytoscape app and The "Sets" panel is the main graphical user interface through which the user creates, Open Cytoscape, then select from the top menu bar Apps→Apps Manager to install it in Cytoscape. To install SetsApp, download SetsApp at (insert website). Session there is a network selected by default), and the program will create sets of User must select a network (usually when a user imports a network or opens up a Sets can be created from different networks. Or edges (but not sets with both nodes and edges, at least in the current version) inĬytoscape. If the node does exist, you call node.data() on the collection object to update it.SetsApp: Maintaining and Manipulating Sets of Nodes and EdgesĬytoscape 3 app allowing the user to create and manipulate sets of nodes If the node doesn't exist, you cy.add() it. 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